Publications

2019

50.  Luque, J., Allison, T.W., Bracken-Grissom, H.D., Jenkins, K.M., Palmer, R.A., Porter, M.L. & Wolfe, J. Preprint Submitted.  Evolution of crab eye structures and the utility of ommatidia morphology in resolving phylogeny. Earth-Science Reviews (Invited). https://doi.org/10.1101/786087. IF: 9.5.

49. Hurt, C., Hultgren, K., Anker, A., Lemmom, A., Lemmon, E., Bracken-Grissom, H. Submitted. First Worldwide Molecular Phylogeny of the Morphologically and Ecologically Hyperdiversified Snapping Shrimp Genus Alpheus (Malacostraca: Decapoda). Systematic Biology.  IF: 10.2

48. Bracken-Grissom, H., DeLeo, D.*, Porter, M., Iwanicki, T., Sickles, J., Frank, T. In Review. Sight beyond eyes: Extraocular photoreception in bioluminescent organs of deep-sea shrimp. IF: 9.5

47. Schweikert L.E.*, Bagge, L.E., Wheeler, B.R, Grace, M.S., Holford, T., McClean, M., Bracken-Grissom, H.D., and Johnsen, S. In Review. An Optical Feedback Mechanism for Regulating Skin Color Change. Science Advances. IF: 12.8

 

46. Tan, M.H., Gan, H.M., Bracken-Grissom, H., Chan, T.Y, Grandjean, F., Austin, C. In Review. More from less: exploring the potential of genome skimming of nuclear markers for phylogenetics, a case study using decapod crustaceans. Molecular Phylogenetics and Evolution. IF: 4.0

45. Timm, L. E.*, Judkins, H., Bracken-Grissom, H.D., Sosnowski, A., Breitbart, M., and Vecchione, M. In Review. Cephalopod population connectivity between the Gulf of Mexico and northwestern Atlantic Ocean inferred for three species based on two complimentary molecular approaches. Deep Sea Research I. IF=2.3.

44. Bracken-Grissom, H. and Wolfe, J.  In Press. The Pancrustacean Conundrum: A Conflicted Phylogeny with Emphasis on Crustacea. In: The Natural History of the Crustacea. 51 pages.

43. Timm*, L.E., Isma, L*, Johnston, M.W, Bracken-Grissom, H.D. Accepted..  Comparative Population Genomics and Biophysical Modeling of Shrimp Migration in the Gulf of Mexico Reveals Current-Mediated Connectivity.  Frontiers in Marine Science.

42. Ditter, R.*, Shulman, S.*, Synder, A.*, and Bracken-Grissom, H. 2019. First records of anchialine shrimp from Acklins, Bahamas with notes on behavior of Barbouria cubensis. Journal of Crustacean Biology.  1–5. doi:10.1093/jcbiol/ruz061. IF: 1.187.

41. Tan, M.H., Gan, H.M., Lee, Y.P., Bracken-Grissom, H.D., Chan, T.Y., Miller, A., Austin, C.M. 2019. The full circle: comparative mitogenomics of the Decapoda (Arthropoda: Crustacea) reveals significant evolutionary heterogeneity in architecture and genomic composition. Scientific Reports. 9:10756 | https://doi.org/10.1038/s41598-019-47145-0. IF=4.12

40.Ditter, R.*, Erdman, R., Goebel, A., and Bracken-Grissom, H.D. 2019. Documenting Phenotypic Hypervariation in the enigmatic anchialine shrimp Barbouria cubensis (Decapoda: Caridea). Zootaxa. 4648(1): 001–026. IF=1.06.

39. Sanchez, J.*, Bracken-Grissom, H.D., Trexler, J.  2019 Freshwater-to-marine transitions may explain the evolution of herbivory in the subgenus Mollienesia (genus Poecilia).  Biological Journal of the Linnaean Society. 127(4): 742-761. IF: 2.532

38. Wolfe, J., Breinholt, J., Crandall, K., Lemmon, A., Lemmon, E., Timm, L.*, Siddall, M. and Bracken-Grissom, H. 2019. A phylogenomic framework, evolutionary timeline, and genomic resources for comparative studies of decapod crustaceans. Proceedings of the Royal Society B. 286: 20190079. IF: 4.8. http://biorxiv.org/cgi/content/short/466540v1

37. Timm, L.E*, Browder, J.A, Lear, S.#, Jackson, T.L., Zink, I.C., Bracken-Grissom, H.D.

2019.  A tree money grows on: the first comprehensive molecular phylogeny of pink shrimp (Decapoda: Farfantepenaeus) reveals cryptic diversity. Invertebrate Systematics. 33(2): 488-500.

IF=2.264 

36. Parvulescu, L., Perez-Moreno, J.*, Panaiotu, C., Dragut, L., Schrimpf, A., Zaharia, C., Weiperth, A., Gal, B., Popovici, I-D., Schubart, C., and Bracken-Grissom, H.D. 2019. A journey on plate tectonics shed light on European crayfish phylogeography.  Ecology and Evolution. 9: 1957-1971. IF =2.5.

2018

35. R.J. Milligan, A. Bernhard, K.M. Boswell, H.D Bracken-Grissom, M.A. D’Elia, S. DeRada, D. English, R. Eytan, C. Hu, C. Lembke, B. Penta, T. Richards, I.C. Romero, M. Shivji, L. Timm, J.D. Warren, M. Weber, D. Wells, T.T. Sutton. 2018. The application of novel research technologies by the Deep Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND) Consortium.  Journal of Marine Science and Technology. 52(6): 81-86. IF: 1.119.

34. DeLeo, D., Vázquez-Miranda, H. *and Perez-Moreno, J.* and Bracken-Grissom, H. 2018. RNA profile diversity across Arthropoda: Guidelines, methodological artifacts, and expected outcomes.  Biology Methods and Protocols. 3(1): https://doi.org/10.1093/biomethods/bpy012.  1-10. IF=pending (new journal).

33. Rotllant, G., Palero, F., Mather, P., Bracken-Grissom, H., Santos, B. 2018. Introduction- Crustacean Genomics Preface: Recent advances in Crustacean Genomics.  Hydrobiologica. 825(1): 1-4. DOI 10.1007/s10750-018-3773-y. IF=2.06

32. Pérez-Moreno JL*, DeLeo D*, Palero F, Bracken-Grissom H.D. 2018. Phylogenetic annotation and genomic architecture of opsin genes in Crustacea. Hydrobiologia. 825(1): 159-175. https://doi.org/10.1007/s10750-018-3678-9. IF=2.06

31. Bracken-Grissom, H.D., Johnsen, S., Widder, E., Messing, C.G., and Frank. T.M. 2018. Decapod diversity associated with deep-sea octocorals in the Gulf of Mexico. Crustaceana. 91(10):1267-1275.  IF=0.47.

30. Pérez-Moreno JL*, Balazas, G. and Bracken-Grissom H.D. 2018. Transcriptomic insights into the loss of vision in Molnár János Cave’s crustaceans. Integrative and Comparative Biology. DOI: 10.1093/icb/icy071. IF = 2.14.

29. Timm, L*., Moahamad, B.#, Churchill, D., & Bracken-Grissom, H.D. 2018. Bathynomus giganteus (Isopoda: Cirolanidae) and the canyon: a population genetics assessment of Desoto Canyon as a glacial refugium for the giant deep-sea isopod. Hydrobiologia. https://doi.org/10.1007/s10750-018-3563-6. IF = 2.06.

2017

28. Varela, C.* and H. D. Bracken-Grissom. 2017. First finding of Macrochiron sargassi G. O. Sars, 1916 (Copepoda: Poecilostomatoida: Macrochironidae) in the Gulf of Mexico. Revista de Investigaciones Marinas. 37(2):100-102.

27. Pérez-Moreno, J. *, Balázs, G., Wilkins#  B., Herczeg, G., and Bracken-Grissom, H.D. 2017. The role of isolation on contrasting phylogeographic patterns in two cave crustaceans. BMC Evolutionary Biology. 17: 247. IF=3.4

 

26.  Varela, C. * and Bracken-Grissom, H.D. 2017. First Finding of the Family Trischizostomidae Lilljeborg, 1865 (Amphipoda: Gammaridea: Lysianassoidea) in the Caribbean Sea.  Novitates Caribaea. 11: 16-20.

 

25. Stern, D., Breinholt, J., Pedraza, C., Lopez-Mejia, M., Owen, C., Bracken-Grissom, H., Fetzner, J., Crandall, K. 2017. Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead-end.  Evolution. (DOI) - 10.1111/evo.13326 IF=4.6.

 

24. Voolstra, C., Worheide, G., Lopez, J., Bracken-Grissom, H.D., et al. 2017.  Leveraging the Power of Community Cooperation to Advance Invertebrate Genomics-Updates from the GIGA consortium. Invertebrate Systematics.  31, 1-7, http://dx.doi.org/10.1071/IS16059, IF=2.264

 

2016

23. Chien-Lin, C., Goy, J.W., Bracken-Grissom, H.D., Felder, D.L., Tsang, M.L., Chan, T.Y. 2016. Phylogeny of Stenopodidea (Crustacea: Decapoda) shrimps inferred from nuclear and mitochondrial genes reveals non-monophyly of the families Spongicolidae and Stenopididae, and most of their composite genera.  Invertebrate Systematics. 30, 479-490. http://dx.doi.org/10.1071/IS16024 IF=2.264.

 

22. Robalino, J., Wilkins, B. #, Bracken-Grissom, H., Chan, T-Y., O’Leary, M. 2016.  The Origin of Large-bodied shrimp that dominate modern global aquaculture. PLOS ONE. 11(7): e0158840.

doi:10.1371/journal.pone.0158840.  IF= 3.23.

 

21. Perez-Moreno, J.*, Iliffe, T., Bracken-Grissom, H.D. 2016.  Life in the Underworld: Anchialine cave biology in the era of speleogenomics. International Journal of Speleology. 45(2), 149-170. IF=1.79

 

2015

20.  Timm, L.* and Bracken-Grissom, H.D. 2015.  The forest for the trees: evaluating molecular phylogenies with an emphasis on higher-level Decapoda Latreille, 1802.  Journal of Crustacean Biology.  35(5), 577-592. IF =1.187.

 

19. Wong, J.*, Perez-Moreno, J.*, Chan, T.Y., Frank, T., Bracken-Grissom, H.D.  2015.  Phylogenetic and transcriptomic analyses reveal the evolution of bioluminescence and light detection in marine deep-sea shrimps of the family Oplophoridae (Crustacea: Decapoda). Molecular Phylogenetics and Evolution. 83: 278-292. IF=4.65

 

18. ­­­­Owen, C., Bracken-Grissom, H.D., Stern, D., Crandall, K.A. 2015.  The synthetic phylogeny of freshwater crayfish: Insights for conservation. Philosophical Transactions of the Royal Society of Biological Sciences. 370: 20140009. IF= 6.23

 

2014

17. Bracken-Grissom, H.D. and D.L. Felder. 2014. Taxonomic revisions of the American snapping shrimp allied to Alpheus floridanus (Crustacea: Decapoda: Alpheidae).  Zootaxa. 3895 (4): 451-491. IF=1.06.

 

16. Bracken-Grissom, H.D., R. Robles and D.L. Felder. 2014. Molecular phylogenetics of snapping shrimp allied to Alpheus floridanus (Crustacea: Decapoda: Alpheidae).  Zootaxa. 3895 (4): 492-502. IF=1.06.

 

15.  Speiser, D.I., Pankey, S., Zaharoff, A.K., Battelle, B.A., Bracken-Grissom, H.D., Brienholt, J.W., Bybee, S.M., Cronin, T.W., Garm, A., Patel, N.H., Porter, M.L., Protas, M.E., Rivera, A.S., Serb, J.M., Zigler, K.S., Crandall, K.A., Oakley, T.H.  2014.  Using Phylogenetically Informed Annotation (PIA) to search for light interacting genes in transcriptomes from non-model organisms. BMC Bioinformatics. 15 (350): 1-12. http://www.biomedcentral.com/1471-2105/15/350.  IF= 3.02.

 

14.  Poore, G.B., Ahyong, S., Bracken-Grissom, H.D., Chan, T.Y., Chu, K.H., Crandall, K.A., Dworschak, P.C., Felder, D.L., Feldman, R.M., Hynzy, M., Lemaitre, R., Karasawa, H., Komai, T., Li, X., Mantelatto, F., Martin, J., Robles, R., Schweitzer, C.E., Tamaki, A., Tsang, M., Tudge, C. 2014.  On stabilising the names of the infrorders of thalassinidean shrimps, Axiidea and Gebiidea. Crustaceana. 87(10) 1258-1272. IF= 0.46

 

13. Felder, D.L., Thoma, B., Schmidt, W., Sauvage, F., Self-Kreyesky, S., Bracken-Grissom, H.D., Fredericq, S. 2014. Monitored Seaweeds and Decapod Crustaceans on Northwestern Gulf Deep Banks Following the Deepwater Horizon Oil Spill.  Bioscience. 64(9): 808-819. IF= 4.739

 

12. Bracken-Grissom, H.D., S. Ahyong, R. Wilkinson, Z. Yang, J. Brienholt, F. Palero, T-Y. Chan, M. Bendall#, R. Feldmann, C. Schweitzer, K.H. Chu, D.L. Felder, R. Robles, D. Kim#, M. Tsang, J. Martin, and K.A. Crandall. 2014. Emergence of the Lobsters: Phylogenetic Relationships, Morphological Evolution and Divergence Time Comparisons of an Ancient Group (Achelata, Astacidea, Glypheidea, Polychelida). Systematic Biology. 63(4): 457-479.  5-yr IF= 13.316

 

11. Lopez, J.V, Bracken-Grissom, H.D. et al. 2014.  Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes.  Journal of Heredity.  105(1):1-18. IF=1.995

 

2013 - 2012

10. Bracken-Grissom, H.D., Ettinger, M.#, S. Ahyong, R. Feldmann, C. Schweitzer, D.L. Felder, and K.A. Crandall. 2013.  A comprehensive and integrative approach to reconstruct the evolutionary history of the Anomura (Crustacea: Decapoda). BMC Evolutionary Biology. 13:128. Highly Accessed.  IF=3.29

 

9. Bracken-Grissom, H.D., Felder, D.L., Volmer, N., Martin, J. and K.A. Crandall. 2012. Phylogenetics Links Monster Larva to Deep-Sea Shrimp. Ecology and Evolution. 2(10): 2367-2373.  Cover Image.  IF=1.18

 

8. Bracken-Grissom, H.D., Yang, C.H.^, D. Kim#, K.A. Crandall and T-Y. Chan.  2012. Phylogenetic Relationships, Character Evolution, and Taxonomic Implications within the Slipper Lobsters (Crustacea: Decapoda: Scyllaridae).  Molecular Phylogenetics and Evolution. 62, 237-250. ^ Co-first author. 5-yr IF=4.107

 

2011 - 2009

7. Bybee, S.M., Bracken-Grissom, H.D., B. Haynes#, R. Hermansen#, R. Byers, M. Clement, J. Udall and K.A. Crandall. 2011. A scalable next-gen approach to multilocus, multitaxa phylogenetics: An example of directed sequencing using Pancrustacea.  Genome Biology and Evolution. 3, 1312–1323. 5-yr IF=4.859

6. Bracken-Grissom, H.D., T. Enders#, C. Jara, and K. Crandall. 2011. Molecular diversity of two freshwater anomuran crab species in Southern Chile (Decapoda: Anomura: Aeglidae) compared to associated morphometric differences. In: C. HELD, C. SCHUBART, S. KOENEMANN (eds.). Phylogeography and population genetics in Crustacea (Crustacean Issues 19), Taylor and Francis/CRC Press, Bocan Raton. 305-322.

 

5. Bybee, S.M., Bracken-Grissom,  H.D., R. Hermansen#, D.L. Felder and K.A. Crandall.  2011. Directed next generation sequencing for phylogenetics: An example using Decapoda. Zoologischer Anzeiger.  250, 497-506. IF=1.4

 

4. Bracken, H.D., S. De Grave, A. Toon, D.L. Felder, and K.A. Crandall. 2010. The Phylogenetic Position, Taxonomic Status, and Divergence Time of the Procarididea (Crustacea: Decapoda). Felgenhauer & Abele, 1983.  Zoologica Scripta 39 (2) 198-212. IF=2.793

 

3. Felder, D. L., P. C. Dworschak, R. Robles, Bracken, H.D., A. M. Windsor, J. M. Felder, and R. Lemaitre. 2009. Obvious Invaders and Overlooked Infauna: Unexpected Constituents and New Discoveries of the Decapod Crustacean Assemblage at Twin Cays, Belize. Smithsonian Contributions to Marine Sciences 38, 181-188.

 

2. Bracken, H.D., A. Toon, D. Felder, J. Martin, M. Finley, J. Rasmussen#, F. Palero, and K.A. Crandall. 2009.  The Decapod Tree of Life: Compiling the data and moving toward a consensus of decapod evolution.  Arthropod Phylogenetics and Systematics 67 (1) 99-116. IF=2.318

 

1. Bracken, H.D., S. De Grave and D.L. Felder. 2009. Phylogeny of the infraorder Caridea based on mitochondrial and nuclear genes (Crustacea: Decapoda). In: J. MARTIN, K.A. CRANDALL, D.L. FELDER (eds.).  Decapod Crustacean Phylogenetics (Crustacean Issues), Taylor and Francis/CRC Press, Bocan Raton. Pp. 281-305.​​​

Posters

Perez-Moreno, J.L., Balazs, G., Wilkins, B., and H.D. Bracken-Grissom. 2017. Contrasting phylogeographic patterns in two sympatric species of surface and cave-dwelling crustaceans. 2017 Florida International University Biosymposium. North Miami, FL, USA. February 4th.

Ditter, R.E., Erdman, R.B., Goebel, A.M., and H.D. Bracken-Grissom. Phenotypic hyper-variation, genetic species identification and populationconnectivity of enigmatic cave shrimp from San Salvador Island, Bahamas. 2016 Florida International University Biosymposium. North Miami, FL, USA. February 6th.

 

Timm, L., and H.D. Bracken-Grissom. Diversity and connectivity of a mesopelagic shrimp as proxies for ecosystem health and recovery in the Gulf of Mexico. 2016. 2016 Gulf of Mexico Oil Spill and Ecosystem Science Conference. Tampa, Florida, USA. February 1st - 4th.

 

Wong, J.M.*, A. Rhodes, and H.D. Bracken-Grissom. Transcriptomics reveal genes involved in bioluminescence and vision in marine deep-sea shrimp (Oplophoridae). 2013. The Crustacean Society Summer Meeting. San José, Costa Rica.  July 7th – 11th. 

 

Wong, J.​M., B.P. Thoma, D.L. Felder, K.A. Crandall, and H.D. Bracken-Grissom. Gene expression and stress response of the flatback mud crab Eurypanopeus depressus exposed to crude oil from the Deepwater Horizon oil spill. 2014. Gulf of Mexico Oil Spill & Ecosystem Science Conference. Mobile, Alabama. January 26th - 29th.